GgaEX1053282 @ galGal4
Exon Skipping
Gene
ENSGALG00000003075 | SLC34A1
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
Coordinates
chr13:9450740-9451627:+
Coord C1 exon
chr13:9450740-9450809
Coord A exon
chr13:9450992-9451159
Coord C2 exon
chr13:9451511-9451627
Length
168 bp
Sequences
Splice sites
3' ss Seq
CCAGCCGTGCTGTGGGGCAGGCG
3' ss Score
3.76
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AACTGCACGGCTTCTGGACATTGCAGCAGTAATGGCATTGGGATCCTCCACAACGTCACCAGGCAGAAAT
Seq A exon
GCGAGCACCTCTTCACGGACACGCCGCTGCCGGACCTGGCCGTGGGGCTGGTTCTGCTGGCCGGGTCCCTCGTCGTGCTCTGCACCTGCCTCATCCTCCTGGTCAAAATCCTCAACTCCCTGCTCAAGGGGCAGGTGGCCAAAGCCATCCAGAAGGTCATCAACACTG
Seq C2 exon
ACCTCCCACACCCATTCAGCTGGCTCACCGGGTACTTCGCCATGGTGGTGGGCGCTGGGATGACCTTCGTGGTCCAGAGCAGCTCCGTCTTCACCTCAGCCATCACACCACTGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075-'18-39,'18-33,19-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
C2:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCACGGCTTCTGGACATT
R:
CGATCAGTGGTGTGATGGCTG
Band lengths:
186-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]