BtaEX6039915 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40241025-40242405:+
Coord C1 exon
chr7:40241025-40241153
Coord A exon
chr7:40241225-40241368
Coord C2 exon
chr7:40242294-40242405
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGCTGGCTTATGTTCCCCAGGGA
3' ss Score
6.89
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AACCCGGACTGGTCCAGAAGCTGCACCGGGCTGGCGTGACTCTCCTCAAGGTGCCACTGATGCTTTCCTTCCTCTACCTCTTCGTCTGCTCCCTGGACGTGCTCAGCTCGGCCTTCCAGCTGGCTGGAG
Seq A exon
GGAAGGTGGCTGGCGACATCTTCAAGGACAACGCCATCCTGTCCAATCCGGTAGCGGGCCTGGTGGTGGGGATCCTGGTGACTGTGCTGGTACAGAGCTCAAGCACCTCCACATCCATTGTGGTCAGCATGGTCTCTTCTGGCT
Seq C2 exon
TGCTGGAGGTGAGCTCTGCCATCCCCATCATCATGGGCTCCAACATCGGCACCTCCGTCACCAACACCATTGTGGCCCTGATGCAGGCGGGGGACAGAACTGACTTCCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351-'4-7,'4-4,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.7=38.6)
A:
PF0269010=Na_Pi_cotrans=FE(33.1=100)
C2:
PF0269010=Na_Pi_cotrans=FE(25.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGTCCAGAAGCTGCAC
R:
CGCCGGAAGTCAGTTCTGTC
Band lengths:
235-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]