RnoEX0082276 @ rn6
Exon Skipping
Gene
ENSRNOG00000015262 | Slc34a1
Description
solute carrier family 34 member 1 [Source:RGD Symbol;Acc:3708]
Coordinates
chr17:9759488-9761583:-
Coord C1 exon
chr17:9761455-9761583
Coord A exon
chr17:9761238-9761381
Coord C2 exon
chr17:9759488-9759599
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGCTGGCTTGTGTTCTCCAGGGA
3' ss Score
8.37
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AGCCCAGGCTGTCCCAGAAGCTTGCCCAGGTTGGCACAAAGCTCCTGAAGGTGCCGTTGATGCTAGGCTTCCTTTACCTCTTTGTCTGCTCCCTGGACGTGCTCAGCTCTGCCTTCCAACTGGCCGGAG
Seq A exon
GGAAAGTGGCTGGGGACATCTTCAAGGACAATGCCATCCTGTCCAACCCAGTGGCAGGGCTGGTGGTGGGAATCCTGGTGACAGTTCTGGTGCAGAGCTCCAGCACCTCGACATCCATCATTGTCAGCATGGTCTCCTCTGGCT
Seq C2 exon
TGTTGGAGGTGAGCTCCGCCATTCCGATAATCATGGGCTCCAACATCGGGACCTCTGTCACCAACACCATTGTGGCCCTGATGCAGGCGGGGGACAGGACTGACTTCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015262-'3-9,'3-8,4-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.7=38.6)
A:
PF0269010=Na_Pi_cotrans=FE(33.1=100)
C2:
PF0269010=Na_Pi_cotrans=FE(25.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGTCCCAGAAGCTTG
R:
CTGAAGTCAGTCCTGTCCCCC
Band lengths:
234-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]