HsaEX6101413 @ hg19
Exon Skipping
Gene
ENSG00000131183 | SLC34A1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:HGNC Symbol;Acc:11019]
Coordinates
chr5:176813222-176814874:+
Coord C1 exon
chr5:176813222-176813350
Coord A exon
chr5:176813424-176813567
Coord C2 exon
chr5:176814763-176814874
Length
144 bp
Sequences
Splice sites
3' ss Seq
CGCTGGCTCATGCTCCCCAGGGA
3' ss Score
6.71
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AGTCCAGGCTGGTCCCCAAGCTGCGCCAGGCTGGCGCCATGCTGCTCAAGGTGCCACTGATGCTCACCTTCCTCTACCTCTTCGTCTGCTCCCTGGACATGCTCAGCTCGGCCTTCCAGCTGGCTGGAG
Seq A exon
GGAAGGTGGCTGGTGACATCTTCAAGGATAACGCCATCCTGTCCAACCCGGTGGCCGGGCTGGTGGTGGGGATCCTGGTGACCGTGCTGGTGCAGAGCTCCAGCACCTCCACATCCATCATCGTCAGCATGGTCTCCTCTGGCT
Seq C2 exon
TGCTGGAGGTGAGCTCTGCCATCCCCATCATCATGGGCTCCAACATCGGCACCTCTGTCACCAACACCATCGTGGCCCTGATGCAGGCGGGGGACAGGACTGACTTCCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131183-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.8=38.6)
A:
PF0269010=Na_Pi_cotrans=FE(33.3=100)
C2:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGCTGGTCCCCAAG
R:
GGAAGTCAGTCCTGTCCCCC
Band lengths:
235-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)