MmuEX6058586 @ mm9
Exon Skipping
Gene
ENSMUSG00000021490 | Slc34a1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:MGI Symbol;Acc:MGI:1345284]
Coordinates
chr13:55502286-55504140:+
Coord C1 exon
chr13:55502286-55502414
Coord A exon
chr13:55502488-55502631
Coord C2 exon
chr13:55504029-55504140
Length
144 bp
Sequences
Splice sites
3' ss Seq
CACTGGCTTCTGTTCTGCAGGGA
3' ss Score
8.17
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AGCCCAGGCTGTCCCAGAAGCTTGCCCAGGTTGGCACGAAGCTCCTGAAGGTGCCTCTGATGCTGGCTTTCCTTTACCTCTTTGTCTGCTCCCTGGATGTGCTCAGCTCCGCCTTCCAGTTGGCTGGAG
Seq A exon
GGAAGGTGGCTGGGGACATCTTCAAGGACAATGCCATCCTATCCAACCCAGTGGCAGGGCTGGTGGTGGGGATCCTGGTGACAGTTCTGGTGCAGAGTTCCAGTACCTCTACATCCATCATTGTCAGCATGGTCTCCTCCGGCT
Seq C2 exon
TGTTGGAGGTGAGCTCCGCCATTCCGATCATCATGGGCTCCAACATCGGAACCTCTGTCACCAACACCATTGTGGCCCTGATGCAGGCAGGGGACAGGACTGACTTCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021490-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.7=38.6)
A:
PF0269010=Na_Pi_cotrans=FE(33.1=100)
C2:
PF0269010=Na_Pi_cotrans=FE(25.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGTCCCAGAAGCTTG
R:
CTGAAGTCAGTCCTGTCCCCT
Band lengths:
234-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: