GgaEX6011248 @ galGal3
Exon Skipping
Gene
ENSGALG00000003075 | SLC34A1
Description
NA
Coordinates
chr13:10213634-10214171:+
Coord C1 exon
chr13:10213634-10213762
Coord A exon
chr13:10213833-10213976
Coord C2 exon
chr13:10214060-10214171
Length
144 bp
Sequences
Splice sites
3' ss Seq
GCCCTCACGCTCTCTCGCAGGCA
3' ss Score
8.29
5' ss Seq
GGCGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
AGCTGGGCTGCTGGGTGAGGGTCCAGTCCATCTGTGTCTCCCTTCTCAAGGTGCCTCTGATGTTTGGCTTCCTGTACCTCTTCGTCTGCTCCCTGGACGTGCTCAGCTCTGCTTTCCAGCTGGCCGGAG
Seq A exon
GCAAAGTGGCAGGGGACATCTTCAAGGACAACGCCATCCTCTCCAACCCCGTAGCCGGGCTGGTGGTGGGCATCCTGGTGACCGTGCTGGTGCAGAGCTCCTCCACCTCCACCTCCATCATTGTCAGCATGGTCTCCTCGGGGC
Seq C2 exon
TGCTGGAGGTGCGCTCTGCCATACCCATCATCATGGGCTCCAACATTGGCACCTCGGTCACCAACACCATCGTGGCCCTCATGCAGGCTGGTGACCCCTTAAGGTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075-'4-9,'4-6,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.8=38.6)
A:
PF0269010=Na_Pi_cotrans=FE(33.3=100)
C2:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGGTGAGGGTCCA
R:
AACCTTAAGGGGTCACCAGCC
Band lengths:
228-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]