BtaEX6040020 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019414 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr7:41108557-41109225:-
Coord C1 exon
chr7:41109109-41109225
Coord A exon
chr7:41108851-41109017
Coord C2 exon
chr7:41108557-41108651
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTGATCTGTTTTAGCCG
3' ss Score
8.16
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGATGGCATACATGTAGCAGTGAAAATTGTAAAAAACGTGGGACGATATCGTGAAGCAGCTCGTTCAGAAATCCAAGTATTAGAGCATTTAAATAGTACTGATCCCAATAGTGTTTT
Seq A exon
CCGATGTGTCCAGATGCTAGAATGGTTTGATCATCATGGTCATGTTTGTATTGTATTCGAACTCTTGGGACTTAGTACCTATGATTTCATTAAAGAAAATAGCTTTCTGCCATTTCAAATTGACCACATCAGGCAAATGGCATATCAGATCTGCCAGTCAATAAATT
Seq C2 exon
TTTTGCATCATAATAAATTAACCCATACAGATCTGAAGCCTGAAAATATTTTATTTGTGAAGTCTGACTATGTAGTCAAATATAATTCTAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019414-'12-9,'12-8,13-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
PF0006920=Pkinase=FE(17.7=100)
C2:
PF0006920=Pkinase=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGCATACATGTAGCAGTGA
R:
TTTCAGGCTTCAGATCTGTATGGG
Band lengths:
162-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]