GgaEX1015768 @ galGal4
Exon Skipping
Gene
ENSGALG00000006057 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr13:13451317-13451891:+
Coord C1 exon
chr13:13451317-13451433
Coord A exon
chr13:13451528-13451694
Coord C2 exon
chr13:13451797-13451891
Length
167 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTTTTTTTTTAAGCCG
3' ss Score
6.82
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GAGAGGAATGCATGTAGCAGTTAAAATAGTGAAAAATGTTGGTAGATACCGAGAGGCGGCCCGCTCAGAAATACAGGTGTTGGAACACTTGAACACCATGGATCCCAGCAGCACTTT
Seq A exon
CCGCTGTGTCCAAATGCTGGAATGGTTTGATCATCATGGCCATGTTTGCATTGTTTTTGAGCTGCTTGGACTTAGCACCTATGATTTCATTAAGGAAAACAGCTTTCTGCCATTTCATATTAATGACATTAGAAATATGGCTTATCAAATCTGCCAATCTATAAACT
Seq C2 exon
TTTTACATCATAATAAATTAACTCATACTGATTTAAAGCCTGAAAATATTTTGTTTGTGGAGTCTGATTACATAGTGAAGTACAACGCAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006057-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
PF0006920=Pkinase=FE(17.7=100)
C2:
PF0006920=Pkinase=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTAGCAGTTAAAATAGTGAAAA
R:
CATTTTTGCGTTGTACTTCACTATGT
Band lengths:
203-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]