RnoEX0021850 @ rn6
Exon Skipping
Gene
ENSRNOG00000003714 | Clk4
Description
CDC-like kinase 4 [Source:RGD Symbol;Acc:1310274]
Coordinates
chr10:36728737-36729379:+
Coord C1 exon
chr10:36728737-36728853
Coord A exon
chr10:36728938-36729104
Coord C2 exon
chr10:36729285-36729379
Length
167 bp
Sequences
Splice sites
3' ss Seq
ATTATTTTGATCTCTTTTAGCCG
3' ss Score
7.45
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGATGGCTTACATGTGGCAGTGAAAATTGTAAAAAATGTAGGCCGTTACCGGGAGGCAGCTCGCTCTGAAATCCAAGTGCTGGAGCACTTGAACAGCACTGACCCCAATAGTGTCTT
Seq A exon
CCGATGTGTCCAGATGCTAGAATGGTTTGATCATCATGGTCATGTTTGTATTGTGTTTGAGCTGCTGGGCCTTAGTACCTATGATTTTATTAAAGAAAACAGCTTTCTGCCATTTCAAATTGATCACATCAGGCAAATGGCTTATCAGATCTGCCAATCTATAAATT
Seq C2 exon
TTTTACATCATAATAAATTAACACACACGGATCTAAAACCTGAAAATATTTTATTTGTAAAGTCTGACTATGTGGTCAAATACAATTCTAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003714-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(13.2=97.5)
A:
PF0006920=Pkinase=FE(19.0=100)
C2:
PF0006920=Pkinase=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGCTTACATGTGGCAGT
R:
TTGTATTTGACCACATAGTCAGACT
Band lengths:
202-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]