DreEX6085337 @ danRer10
Exon Skipping
Gene
ENSDARG00000005908 | clk4b
Description
CDC-like kinase 4b [Source:ZFIN;Acc:ZDB-GENE-050227-19]
Coordinates
chr21:32250920-32251471:-
Coord C1 exon
chr21:32251355-32251471
Coord A exon
chr21:32251103-32251269
Coord C2 exon
chr21:32250920-32251014
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTGCCTCTGTTTCTGTGCAGTGC
3' ss Score
9.71
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AGGTAATGTAAGAGTGGCACTGAAAATCATCAAAAATATTGAGCGCTACCGTGAGGCAGCATTGTCAGAAGTTGATGTGCTTGAGCGGATAAACTCTCTCGATGATGAAAAGAGATT
Seq A exon
TGCTTGTGTCCGGATGCTTGACTGGTTCGATCACCACGGCCACATCTGCATAGTGTTTGAGCTGCTGGGTCTGAGCACATATGACTTCCTGAAGGAGAATGGATTCATGCCTTTCTCGCTGACCCAGATTAGACACATGGCGGACCAGATCTTTAGGGCTGTGCGCT
Seq C2 exon
TTCTGCATAAAAATAAGTTGACGCACACTGACCTGAAGCCTGAAAACATTCTCTTTGTGGACTCCAACTATGACATTAAATATAACTCAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005908-'8-9,'8-7,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
PF0006920=Pkinase=FE(17.7=100)
C2:
PF0006920=Pkinase=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTAATGTAAGAGTGGCACTGA
R:
AATGTCATAGTTGGAGTCCACA
Band lengths:
194-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]