BtaEX6040278 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020780 | SBNO2
Description
Bos taurus strawberry notch homolog 2 (Drosophila) (SBNO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001077911]
Coordinates
chr7:45211701-45212190:-
Coord C1 exon
chr7:45212078-45212190
Coord A exon
chr7:45211906-45211977
Coord C2 exon
chr7:45211701-45211809
Length
72 bp
Sequences
Splice sites
3' ss Seq
CGGCCTCCCATCCTGGGCAGGGG
3' ss Score
7.34
5' ss Seq
AAGGTACCC
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCCGGACCCACCGCTCCAACCAGGTCTCTGCGCCGGAGTATATCTTCCTCATTTCAGAGCTGGCAGGGGAGCGCAGGTTTGCTTCCATCGTGGCCAAGCGGCTGGAGAGCCTG
Seq A exon
GGGGCTCTGACCCATGGGGACCGCCGTGCCACTGAGTCCCGGGACCTGAGCAAGTACAACTTTGAGAACAAG
Seq C2 exon
TATGGTGCCCGGGCGCTCAGCTGTGTCCTCACCACCATCCTAAGCCAGACGGAGAGCAAAGTGCCACTGCCCCAGGGCTACCCTGGAGGGGATGCCGCCTTCTTCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020780-'30-37,'30-36,31-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.125 C2=0.027
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=FE(13.3=100)
A:
PF138711=Helicase_C_4=FE(8.2=100)
C2:
PF138711=Helicase_C_4=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATTTCAGAGCTGGCAGGG
R:
CACGGAAGAAGGCGGCATC
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]