DreEX6098667 @ danRer10
Exon Skipping
Gene
ENSDARG00000016188 | SBNO2 (1 of 2)
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr22:17672675-17673150:-
Coord C1 exon
chr22:17673038-17673150
Coord A exon
chr22:17672860-17672931
Coord C2 exon
chr22:17672675-17672783
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTGCATTTTAATAGGGA
3' ss Score
7.56
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGCGCACACATCGTTCCAACCAAGTCAATGCACCAGAGTACATCTTCCTTATCTCCGAATTGGCAGGCGAGCGACGTTTTGCATCTATCGTGGCGAAGAGGCTGGAGAGCCTG
Seq A exon
GGAGCTTTGACTCATGGTGACAGGAGAGCCACAGAGTCTAGAGACCTGAGCAAATACAACTTTGAAAATAAA
Seq C2 exon
TACGGTACCAAAGCTCTTGATAAGATCACCAAAACCATCCTTGGTCAAACTGAAAGCAAGGTACCTCCTCCAAAGGACTATCCTGGTGGAGAAGCCATGTTTTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016188-'24-23,'24-22,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.125 C2=0.324
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=FE(13.3=100)
A:
PF138711=Helicase_C_4=FE(8.3=100)
C2:
PF138711=Helicase_C_4=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACATCGTTCCAACCAAG
R:
CCTTGCTTTCAGTTTGACCAAGG
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]