RnoEX6030573 @ rn6
Exon Skipping
Gene
ENSRNOG00000013987 | Sbno2
Description
strawberry notch homolog 2 [Source:RGD Symbol;Acc:1307194]
Coordinates
chr7:12512061-12512517:+
Coord C1 exon
chr7:12512061-12512173
Coord A exon
chr7:12512255-12512326
Coord C2 exon
chr7:12512409-12512517
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTCCTTTGCTACCCTGACAGGGT
3' ss Score
7.08
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCCGCACCCACAGATCCAACCAGGTCTCAGCGCCCGAGTATGTCTTCCTTATCTCCGAGCTGGCAGGGGAGCGCAGGTTCGCCTCCATTGTGGCCAAGCGGCTGGAGAGTCTG
Seq A exon
GGTGCTCTGACCCACGGAGATCGACGGGCCACTGAGTCCCGGGACCTGAGCAAGTATAACTTCGAGAACAAG
Seq C2 exon
TATGGCGCCCGTGCGCTCAGCCGTGTCCTTGCCACAATCATGGGCCAGACAAACAACAGGGTGCCCCTGCCCCAGGGCTATCCAGGAGGGGATGCTGCCTTTTTTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013987-'35-39,'35-38,36-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.167 C2=0.108
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=FE(13.3=100)
A:
PF138711=Helicase_C_4=FE(8.2=100)
C2:
PF138711=Helicase_C_4=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACAGATCCAACCAGGTCT
R:
CCTGTTGTTTGTCTGGCCCAT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]