MmuEX6049753 @ mm10
Exon Skipping
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:80060394-80060901:-
Coord C1 exon
chr10:80060789-80060901
Coord A exon
chr10:80060590-80060661
Coord C2 exon
chr10:80060394-80060502
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTCCTTCACTACCCTGGCAGGGT
3' ss Score
6.35
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCCGCACCCACAGGTCCAACCAGGTCTCAGCACCCGAGTACGTCTTCCTTATCTCAGAACTGGCAGGGGAGCGCAGGTTTGCCTCCATTGTGGCCAAGCGGCTCGAAAGTCTG
Seq A exon
GGTGCCCTCACCCATGGAGATCGCCGCGCCACTGAGTCCCGAGACCTGAGCAAGTACAACTTTGAGAACAAG
Seq C2 exon
TATGGCGCCCGTGCGCTCAGCCGCGTCCTTGCTACAATCATGGGCCAGACGGACAACAGGGTGCCCCTGCCCCAGGGCTATCCAGGAGGGGATACCGCCTTCTTTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673-'57-67,'57-66,58-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.167 C2=0.108
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=FE(13.3=100)
A:
PF138711=Helicase_C_4=FE(8.2=100)
C2:
PF138711=Helicase_C_4=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCAGAACTGGCAGGGGAG
R:
AAAGAAGGCGGTATCCCCTCC
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types