GgaEX0003385 @ galGal3
Exon Skipping
Gene
ENSGALG00000002672 | SBNO2
Description
NA
Coordinates
chr28:2411591-2413090:-
Coord C1 exon
chr28:2412978-2413090
Coord A exon
chr28:2412065-2412136
Coord C2 exon
chr28:2411591-2411699
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGCTTGGTCTGTCTTCCTAGGGT
3' ss Score
9.07
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GTCGAACGCACCGATCAAACCAAGTTTCTGCTCCAGAGTATGTCTTCCTTATCTCTGAGCTAGCTGGAGAGAGGAGGTTTGCCTCCATCGTGGCAAAACGACTGGAGAGCCTA
Seq A exon
GGTGCCTTAACTCACGGAGACCGGAGGGCCACTGAATCCCGAGACCTCAGCAAGTACAACTTTGAGAATAAG
Seq C2 exon
TATGGGGCTAAAGCACTAGACAGAGTTCTCTCCACTATCCTCAACTACAAGGAGAACAGAGTTCCTGTGCCCAAGAGCTATGAGAGAGGAGAGGCTGCGTTTTTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.079 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=FE(13.3=100)
A:
PF138711=Helicase_C_4=FE(8.2=100)
C2:
PF138711=Helicase_C_4=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAGCTAGCTGGAGAGAGG
R:
GGAAAAACGCAGCCTCTCCTC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event