BtaEX6041862 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044033 | EDIL3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:HGNC Symbol;Acc:HGNC:3173]
Coordinates
chr7:86476089-86638968:-
Coord C1 exon
chr7:86638902-86638968
Coord A exon
chr7:86510104-86510232
Coord C2 exon
chr7:86476089-86476118
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTTTTATTTCTCAGGTG
3' ss Score
11.46
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATGAAGCACTCGGTGGCTGCTTGGCTTCTGCTTGGGCTCAGCCTCAGCGTCCCTCAGTTCTGCAGAG
Seq A exon
GTGATATTTGTGATCCCAATCCTTGTGAAAATGGAGGTATCTGCTTGCCAGGATTGTCTGATGGTTCCTTTTCCTGCAAGTGTCCAGATGGCTTCACAGGTCCCAACTGTTCTAGTGTTGTGGAGGTTG
Seq C2 exon
CATCAGATGATGAAGAGCCAACTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044033-'0-2,'0-0,4-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGCACTCGGTGGCTG
R:
TGAAGTTGGCTCTTCATCATCTGA
Band lengths:
93-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]