MmuEX6059541 @ mm10
Exon Skipping
Gene
ENSMUSG00000034488 | Edil3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:MGI Symbol;Acc:MGI:1329025]
Coordinates
chr13:88821472-88977784:+
Coord C1 exon
chr13:88821472-88822048
Coord A exon
chr13:88944820-88944948
Coord C2 exon
chr13:88977755-88977784
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACTCTGATTCTGTTCCTCAGGTG
3' ss Score
9.62
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCTCTCGCTTCATTGTTCTCCAAGTCAGAAGCCCCCGCAGCCGCCGCGGCAGCAGCGTGAGCCGTAGTCACTGCTGGCCGCTTCGCCTGCGGTGCGCGCACGGAAATCGGGGAGCCAGGAACCCAAGGAGCCCGCGCTCCGCCCGCTGTGCCTCTGCTAGGACCCACTCGCAGCCCCAGCCTCTCTCAAGCGCACCCACCTCCGCGCACCCCAGCTCAGGCGAAGCTGGAGTGAGGGGTGAATCACCCTTTCTCTAGGGCCACCACTCTTTTATCGCCCTTCCCAAGAATTTGAGGAAGCGCTGCGGGAGGAAAGACGTCCTCTTGAATCTCTGACAGGGCGGGGTTTACTGCTGTCCTGCAGGGCCGCCTCGCCTACTGTGCCCTCCGCTACGACCCCGGACCAGCCCAGGTCACGTCCGTGAGAAGGGATCATGAAGCACTTGGTAGCAGCCTGGCTTTTGGTTGGACTCAGCCTCGGGGTGCCCCAGTTCGGCAAAG
Seq A exon
GTGACATTTGCAACCCGAACCCCTGTGAAAATGGTGGCATCTGTCTGTCAGGACTGGCTGATGATTCCTTTTCCTGTGAGTGTCCAGAAGGCTTCGCAGGTCCGAACTGCTCTAGTGTTGTGGAGGTTG
Seq C2 exon
CATCAGATGAAGAAAAGCCTACTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034488-'0-7,'0-5,13-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=75.0)
C2:
NO
Main Skipping Isoform:
ENSMUST00000081769fB9254
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGAATTTGAGGAAGCGC
R:
CTGCTGAAGTAGGCTTTTCTTCA
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types