HsaEX6098990 @ hg19
Exon Skipping
Gene
ENSG00000164176 | EDIL3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:HGNC Symbol;Acc:3173]
Coordinates
chr5:83525673-83680611:-
Coord C1 exon
chr5:83680126-83680611
Coord A exon
chr5:83549902-83550030
Coord C2 exon
chr5:83525673-83525702
Length
129 bp
Sequences
Splice sites
3' ss Seq
GGTTTTTTTTTATGCCTTAGGTG
3' ss Score
8.83
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGAAGCCCCGCAGCCGCCGCGCGGAGAACAGCGACAGCCGAGCGCCCGGTCCGCCTGTCTGCCGGTGGGTCTGCCTGCCCGCGCAGCAGACCCGGGGCGGCCGCGGGAGCCCGCGCCCCGCCCGCCGCGCCTCTGCCGGGACCCACCCGCAGCGGAGGGCTGAGCCCGCCGGCGGCTCCCCGGAGCTCACCCACCTCCGCGCGCCGGAGCGCAGGCAAAAGGGGAGGAAAGGCTCCTCTCTTTAGTCACCACTCTCGCCCTCTCCAAGAATTTGTTTAACAAAGCGCTGAGGAAAGAGAACGTCTTCTTGAATTCTTTAGTAGGGGCGGAGTCTGCTGCTGCCCTGCGCTGCCACCTCGGCTACACTGCCCTCCGCGACGACCCCTGACCAGCCGGGGTCACGTCCGGGAGACGGGATCATGAAGCGCTCGGTAGCCGTCTGGCTCTTGGTCGGGCTCAGCCTCGGTGTCCCCCAGTTCGGCAAAG
Seq A exon
GTGATATTTGTGATCCCAATCCATGTGAAAATGGAGGTATCTGTTTGCCAGGATTGGCTGATGGTTCCTTTTCCTGTGAGTGTCCAGATGGCTTCACAGACCCCAACTGTTCTAGTGTTGTGGAGGTTG
Seq C2 exon
CATCAGATGAAGAAGAACCAACTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164176-'0-2,'0-1,2-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTAACAAAGCGCTGAGGA
R:
CTGCTGAAGTTGGTTCTTCTTCA
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)