GgaEX1021575 @ galGal4
Exon Skipping
Gene
ENSGALG00000015630 | EDIL3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:HGNC Symbol;Acc:HGNC:3173]
Coordinates
chrZ:61983370-62096270:+
Coord C1 exon
chrZ:61983370-61983436
Coord A exon
chrZ:62061312-62061440
Coord C2 exon
chrZ:62096241-62096270
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTTTTAACCCATAGGGG
3' ss Score
10.63
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATGAGCCGTGCGGTGCTGGCCTGGCTGGTGCTCTGCGGGAGCCTGGCGGCGCCGCGCCTCGCCCGAG
Seq A exon
GGGACTTGTGTGACTCCAATCCCTGCAAAAATGGTGGCATCTGTCTGTCGGGGTTGAATGATGACTTTTACTCATGCGAGTGTCCTGAAGGCTTCACAGATCCCAACTGTTCTAGTGTTGTGGAGGTTG
Seq C2 exon
CCTCCATTGAAGAGGAACCAACTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015630-'0-3,'0-0,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]