RnoEX0030799 @ rn6
Exon Skipping
Gene
ENSRNOG00000033064 | Edil3
Description
EGF like repeats and discoidin domains 3 [Source:RGD Symbol;Acc:1588887]
Coordinates
chr2:17616401-17778900:+
Coord C1 exon
chr2:17616401-17616750
Coord A exon
chr2:17731020-17731148
Coord C2 exon
chr2:17778871-17778900
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACTCTTACTCTGTTCCTCAGGGG
3' ss Score
8.24
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCCTCTGCTAAGACCCACTTGCAGCCCCAGCCTATCTCAAGCGCACCCACCTCCGCGCATCCCAGCGCAAGCGAAGCTGGGGTGAGGGGGGGAGTCACCCTTTCTCTAGGGCCATCACTCTTTATCGCCCTTCCCAAGAATTTGTTTGAGGAAGCGCTGCAGGAGGAAGACGTCCTCTTGAATCTCTGACAGGGCGGGGTTTACTGCTGTCCTGCAGGGACACCTAGCCTACAGTGCCCTCCGCTACGACCCCGGACCAACCCGGGTCACGTCCGGGAGAAGGATCATGAAGCACTTGGTAGCAGCCTGGCTTTTGGTTGGACTCCTCGGTGTGCCCCAGTTCGTCAAAG
Seq A exon
GGGACATTTGCAACCCCAATCCCTGTGAAAATGGTGGCATCTGTCTGTCAGGATTGGCGGATGATTCCTTTTCCTGTGAGTGTCCAGACGGCTTCACAGATCCAAACTGCTCTAGTGTTGTGGAGGTTG
Seq C2 exon
CATCAGATGAAGAAAAGCCTACTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033064-'0-3,'0-2,7-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=75.0)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000064991fB4624
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCCTTCCCAAGAATTTGT
R:
CTGCTGAAGTAGGCTTTTCTTCA
Band lengths:
256-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]