BtaEX6041865 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044033 | EDIL3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:HGNC Symbol;Acc:HGNC:3173]
Coordinates
chr7:86302425-86345036:-
Coord C1 exon
chr7:86344855-86345036
Coord A exon
chr7:86304197-86304352
Coord C2 exon
chr7:86302425-86302569
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATTGTGCTTTGTCTCCTCAGATA
3' ss Score
10.65
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AATGCTCTGGCCCATTGGGAATTGAAGGGGGAATCATTTCAAATCAGCAAATCACAGCTTCATCTACCCACCGAGCTCTTTTTGGACTCCAGAAGTGGTATCCCTACTATGCACGTCTGAATAAGAAGGGACTTATAAATGCCTGGACAGCTGCAGAAAATGACAGATGGCCATGGATTCAG
Seq A exon
ATAAATTTACAGAGAAAAATGAGAGTTACTGGTGTGATTACTCAAGGAGCCAAGAGGATTGGAAGTCCAGAGTATATCAAATCCTACAAAATAGCATATAGTAATGATGGAAAAACTTGGACAATGTACAAAGCGAAAGGCACCAATGAAGACATG
Seq C2 exon
GTATTCCATGGAAACGTTGATAACAACACACCCTATGCTAACTCTTTCACACCCCCCATAAAAGCTCAGTATGTGAGACTCTACCCCCAAGTTTGTCGAAGGCATTGCACTTTGAGAATGGAACTTCTTGGATGTGAACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044033-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(31.7=72.1)
A:
PF0075420=F5_F8_type_C=FE(36.7=100)
C2:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTTCATCTACCCACCGA
R:
CAAAGTGCAATGCCTTCGACA
Band lengths:
243-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]