GgaEX6050886 @ galGal4
Exon Skipping
Gene
ENSGALG00000015630 | EDIL3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:HGNC Symbol;Acc:HGNC:3173]
Coordinates
chrZ:62178952-62197589:+
Coord C1 exon
chrZ:62178952-62179133
Coord A exon
chrZ:62196211-62196366
Coord C2 exon
chrZ:62197445-62197589
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTACCATTTTACTGTTTCAGATA
3' ss Score
10.02
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GATGCTCTGGCCCACTAGGGATAGAAGGAGGAATTGTGTCAAATCAACAAATTACTGCATCATCCACTCATCGAGCTCTCTTTGGACTCCAGAAATGGTATCCGTACTATGCACGACTTAATAAGAAGGGTCTTGTGAACGCTTGGACTGCTGCAGAAAATGACAGATGGCCGTGGATTCAG
Seq A exon
ATAAACCTGCAGAAGAAGATGCGAGTCACTGGAGTTATAACCCAAGGTGCCAAGAGGATTGGAAGTCCAGAATATGTGAAGTCTTACAAAATTGCTTATAGTAATGATGGGAAGTCGTGGACAATGTACAAAGTAAAAGGCACAAATGAGGATATG
Seq C2 exon
GTGTTCCGTGGAAATGTGGACAACAATACCCCATATGCTAACTCCTTCACTCCTCCAATAAAATCACAGTACATACGCCTGTATCCTCAGGTTTGCCGACGACACTGCACATTGAGAATGGAACTCCTGGGCTGTGAGTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015630-'10-14,'10-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(31.7=72.1)
A:
PF0075420=F5_F8_type_C=FE(36.7=100)
C2:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGCTCTCTTTGGACTCCA
R:
CACAGCCCAGGAGTTCCATTC
Band lengths:
248-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]