DreEX0028926 @ danRer10
Exon Skipping
Gene
ENSDARG00000093413 | edil3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:ZFIN;Acc:ZDB-GENE-060503-366]
Coordinates
chr5:46127398-46165159:-
Coord C1 exon
chr5:46164978-46165159
Coord A exon
chr5:46130955-46131110
Coord C2 exon
chr5:46127398-46127542
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGCATCTGTTCCTTTCTCAGATT
3' ss Score
10.77
5' ss Seq
ATAGTGAGA
5' ss Score
1.69
Exon sequences
Seq C1 exon
AATGTTCTGGTCCACTGGGCATGGAGGGTGGCATCATCTCCAACCAGCAGATAACAGCCTCATCTACTCACCGAGCTCTCTTCGGCCTCCAGAAGTGGTACCCCTACTTTGCCCGGCTGAATAAGAAGGGCCTGGTGAACGCCTGGACTGCAGCCGAGAATGACAGATGGCCCTGGATTCAG
Seq A exon
ATTAACCTGCAGAGGAGGATGCGGGTCACAGGAGTGATAACCCAAGGAGCCAAGCGCATCGGGAGCCCAGAATATGTTAAGTCCTACAAAGTGGCCTACAGCGATGACGGAAAGACCTGGAGGACATACAAAGTCAAGGGCACAGATGAAGACATA
Seq C2 exon
ATCTTCCGAGGGAATATTGATAACAACACTCCATTTGCGAACTCATTCACCCCTCCAATCGAGGCTCAGTATGTGAGGATCTACCCGCAGGTGTGCAGGAGACACTGTACTCTCCGCATGGAGCTGCTGGGCTGTGAGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093413_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(31.7=72.1)
A:
PF0075420=F5_F8_type_C=FE(37.4=100)
C2:
PF0075420=F5_F8_type_C=PD(30.2=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCATCATCTCCAACCAG
R:
CCTGCGGGTAGATCCTCACAT
Band lengths:
247-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]