Special

MmuEX0016246 @ mm10

Exon Skipping

Gene
ENSMUSG00000034488 | Edil3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:MGI Symbol;Acc:MGI:1329025]
Coordinates
chr13:89131674-89180380:+
Coord C1 exon
chr13:89131674-89131855
Coord A exon
chr13:89177145-89177300
Coord C2 exon
chr13:89180236-89180380
Length
156 bp
Sequences
Splice sites
3' ss Seq
GATCATATTTTTCTCCTCAGATA
3' ss Score
9.7
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AATGCTCTGGGCCATTGGGAATCGAAGGTGGGATCATATCTAATCAGCAAATCACAGCTTCATCTACTCACCGAGCTCTTTTTGGACTCCAGAAGTGGTATCCCTACTATGCTCGACTTAATAAGAAGGGCCTTATAAATGCCTGGACAGCTGCTGAAAATGACAGATGGCCATGGATTCAG
Seq A exon
ATAAATTTGCAAAGAAAAATGAGAGTCACTGGTGTTATTACCCAAGGAGCAAAAAGGATTGGAAGCCCAGAGTACATAAAATCCTACAAAATTGCCTACAGCAATGACGGGAAGACCTGGGCAATGTACAAAGTAAAAGGCACCAATGAAGAGATG
Seq C2 exon
GTCTTTCGTGGAAATGTTGATAACAACACACCATATGCTAATTCTTTCACACCCCCAATCAAAGCTCAGTATGTAAGACTCTACCCCCAAATTTGTCGAAGGCATTGTACTTTAAGAATGGAACTTCTTGGCTGTGAGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034488-'25-18,'25-17,27-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.020
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0075420=F5_F8_type_C=PU(31.7=72.1)

							
A:
PF0075420=F5_F8_type_C=FE(36.7=100)

							
C2:
PF0075420=F5_F8_type_C=PD(29.5=83.7)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000080462





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000044652, ENSMUSP00000112829
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm9




Conservation


Human
(hg38)
chr5:84066451-84066606 
HIGH PSI
HsaEX6098993
(EDIL3)
Human
(hg19)
chr5:83362270-83362425 
HIGH PSI
HsaEX6098993
(EDIL3)
Rat
(rn6)
chr2:17982675-17982830 
HIGH PSI
RnoEX0030802
(Edil3)
Cow
(bosTau6)
chr7:86304197-86304352 
HIGH PSI
BtaEX6041865
(EDIL3)
Chicken
(galGal4)
chrZ:62196211-62196366 
HIGH PSI
GgaEX6050886
(EDIL3)
Chicken
(galGal3)
chrZ:61030650-61030805 
HIGH PSI
GgaEX6050886
(EDIL3)
Zebrafish
(danRer10)
chr5:46130955-46131110 
HIGH PSI
DreEX0028926
(edil3)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTGGGCCATTGGGAATCGAAG

				
R: 
TGAGCTTTGATTGGGGGTGTG

				
Band lengths: 
244-400

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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