RnoEX0030802 @ rn6
Exon Skipping
Gene
ENSRNOG00000033064 | Edil3
Description
EGF like repeats and discoidin domains 3 [Source:RGD Symbol;Acc:1588887]
Coordinates
chr2:17927710-17984683:+
Coord C1 exon
chr2:17927710-17927891
Coord A exon
chr2:17982675-17982830
Coord C2 exon
chr2:17984539-17984683
Length
156 bp
Sequences
Splice sites
3' ss Seq
GATTATATTTGTCTCCTCAGATA
3' ss Score
9.76
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
AATGCTCTGGGCCATTGGGAATTGAAGGTGGGATCATATCTAACCAGCAAATCACAGCTTCATCTACACATCGAGCTCTTTTTGGACTACAGAAATGGTATCCCTACTATGCTCGGCTTAATAAGAAGGGCCTTATAAATGCCTGGACAGCTGCTGAAAATGACAGATGGCCGTGGATTCAG
Seq A exon
ATAAATTTACAAAGAAAAATGAGAGTAACGGGTGTTATTACCCAAGGAGCCAAAAGGATTGGAAGCCCAGAATACATCAAATCCTACAAAATTGCCTACAGCAATGACGGGAAGACCTGGGCAATGTACAAAGTAAAAGGCACCAATGAAGAAATG
Seq C2 exon
GTCTTCCGTGGCAATGTTGATAACAACACACCCTACGCTAATTCCTTTACACCTCCAATCAAAGCTCAGTACGTAAGACTCTACCCCCAAATTTGTCGAAGGCACTGTACATTAAGAATGGAACTTTTTGGCTGTGAGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033064-'12-11,'12-9,17-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(31.7=72.1)
A:
PF0075420=F5_F8_type_C=FE(36.7=100)
C2:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCATTGGGAATTGAAGGT
R:
ACTGAGCTTTGATTGGAGGTGT
Band lengths:
244-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]