BtaEX6043234 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009242 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr11:13178805-13180902:-
Coord C1 exon
chr11:13180774-13180902
Coord A exon
chr11:13179458-13179499
Coord C2 exon
chr11:13178805-13178939
Length
42 bp
Sequences
Splice sites
3' ss Seq
TCTTTATTTTGCCTTTCTAGGAA
3' ss Score
12.04
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GCATTTATAGAAATAAATAGAAAATCTGCAGATTCTATGATAAAATTTTATACCTGCTTCCCAATATCAATGGATGGAAATCAACTCTCAATAAGTATGGCTCCTGAAAACATGAATTTAAAAGACGAG
Seq A exon
GAAGCTATATTTACAACCTTGATTAGAGAAAATGACCCAGAG
Seq C2 exon
GTAAATATAGATAAAATTTACGATCGATTTGTACATCTTGATAACTTACCGGAAGATGGACTTCAGTGTGTACTTTGTGTCGGACTTCAGTTTGGGAAAGTGGATCACCATGTATACATGAGTAATAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009242-'21-25,'21-24,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138931=RRM_5=PU(32.1=37.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGGCTCCTGAAAACATGA
R:
CCCAAACTGAAGTCCGACACA
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]