HsaEX6013865 @ hg38
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr2:71403870-71406262:+
Coord C1 exon
chr2:71403870-71403998
Coord A exon
chr2:71405601-71405642
Coord C2 exon
chr2:71406128-71406262
Length
42 bp
Sequences
Splice sites
3' ss Seq
TATCTATTTTTGCTTTTTAGGAA
3' ss Score
11.39
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCATATATAGAAATAAATAGAAAAGCTGCTGAGTCTATGGTAAAATTTTATACCTGCTTCCCAGTATTGATGGATGGAAATCAACTCTCAATAAGTATGGCTCCTGAAAACATGAATATAAAAGATGAG
Seq A exon
GAAGCTATATTTATAACCTTGGTAAAAGAAAATGACCCAGAG
Seq C2 exon
GCAAACATAGATACAATTTATGATCGATTTGTACATCTTGATAATTTACCGGAAGATGGACTTCAGTGTGTACTTTGTGTTGGACTTCAGTTTGGAAAAGTGGATCACCATGTATTCATAAGTAATAGAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292-'70-70,'70-68,73-70
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138931=RRM_5=PD(58.9=76.7)
A:
NO
C2:
PF138931=RRM_5=PU(32.1=37.8)
Main Skipping Isoform:
ENST00000264447fB8199
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGGCTCCTGAAAACATGA
R:
TCCAAACTGAAGTCCAACACA
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains