RnoEX0101589 @ rn6
Exon Skipping
Gene
ENSRNOG00000014501 | Zfp638
Description
zinc finger protein 638 [Source:RGD Symbol;Acc:1309746]
Coordinates
chr4:115661034-115662795:+
Coord C1 exon
chr4:115661034-115661162
Coord A exon
chr4:115661953-115661994
Coord C2 exon
chr4:115662661-115662795
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTGAATGTTTGGCTTTCTAGGAA
3' ss Score
9.09
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCATATATAGAAATAAACAAAAAATCTGCAGATTCTATGGTAAAGTTTTACACGTGCTTCCCAATATGCATGGATGGAAATCAGCTCTCCATAAGCATGGCTCCTGAGGATGTAGATTTAAAAGATGAG
Seq A exon
GAAGCTCTCTTTACAACTTTGATTCAAGAAAGTGACCCGGAG
Seq C2 exon
GCAAATATTGATGAAATTTACAACCGATTTGTACATCTTGACAATTTACCTGAAGACGGACTTCAGTGTGTGCTTTGTGTTGGACATCAGTTTGGGAAAGTGGATCGCTATGTGTTCATGAGTAACAGAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014501-'26-26,'26-25,27-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF142591=RRM_6=PD(43.3=67.4)
A:
NO
C2:
PF138931=RRM_5=PU(32.1=37.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGGCTCCTGAGGATGTA
R:
AGCGATCCACTTTCCCAAACT
Band lengths:
145-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]