DreEX0009681 @ danRer10
Exon Skipping
Gene
ENSDARG00000104169 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr7:19380531-19381614:-
Coord C1 exon
chr7:19381483-19381614
Coord A exon
chr7:19381316-19381357
Coord C2 exon
chr7:19380531-19380662
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTTTCCCTCTAAAGGAA
3' ss Score
9.93
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCCTATCTGCAGATGCCCAACACAGAGGCAGCTGAAAAAATGGTGAAGACCTTTTCTGAGACCCCAGCTAAAGTGAAAGAGAAAGAGATAACCGTAAAGATGATGATGCAACCCATTGATTTGAACTACACT
Seq A exon
GAATCAGTTTTCAGAGTGCTCATGGGCATGGAGAAATCACCA
Seq C2 exon
GAAATTATGACTTTACCAGAACGGCTTCTCATTGTTGGCAATGTGCCAAAAGCGCTTGGGCCAGTCAAGGAAGTAGAAACTGTAGTCAAGCGTTATGGTATCTTCAAGAAGGTTTTACACCTTAATGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104169-'17-20,'17-19,18-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF142591=RRM_6=PD(44.1=68.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTTCTGAGACCCCAGCT
R:
CCAAGCGCTTTTGGCACATTG
Band lengths:
143-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]