MmuEX1028577 @ mm10
Exon Skipping
Gene
ENSMUSG00000030016 | Zfp638
Description
zinc finger protein 638 [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83965529-83967427:+
Coord C1 exon
chr6:83965529-83965657
Coord A exon
chr6:83966447-83966488
Coord C2 exon
chr6:83967293-83967427
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTGAATGTTTGACTTTATAGGAA
3' ss Score
8.31
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCATATATAGAAATAAACAAAAAATCTGCAGATTCTATGGTAAAATTTTACACCTGCTTCCCAATATCCATGGATGGAAATCAGCTCTCCATAAGTATGGCTCCTGAGCATGTGGACTTAAAAGATGAG
Seq A exon
GAAGCTCTCTTTACAACTTTGATTCAAGAAAATGACCCAGAG
Seq C2 exon
GCAAATATTGATAAAATTTACAACCGATTTGTACATCTTGACAATTTACCTGAAGATGGACTTCAGTGTGTGCTTTGTGTTGGGCATCAGTTTGGAAAAGTGGATCGCTATATGTTCATGAGTAACAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-'42-44,'42-43,43-44
Average complexity
C1
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF142591=RRM_6=PD(43.3=67.4)
A:
NO
C2:
PF138931=RRM_5=PU(33.3=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGAAATCAGCTCTCCA
R:
GATGCCCAACACAAAGCACAC
Band lengths:
147-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types