BtaEX6043238 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009242 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr11:13162443-13167124:-
Coord C1 exon
chr11:13165906-13167124
Coord A exon
chr11:13165239-13165304
Coord C2 exon
chr11:13162443-13163397
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTCTTATTTAATATTTCAGACT
3' ss Score
7.94
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TGGATAAGGTTGTAGCTGCAGTGAAAGAAAAGCCTGCAGAAAACTCAGTGACCAAGGCATGTCCAAATAAAACAGTGGTTCAGGCCAATAAGCCTGATGAAACGAGTAAAATCAGTATGCTGGTTGCATCAAATGCATCTAGCAGTAAATCAGGCATCAAGGCTGATGTGGTCTCTTCTACAAAGGCAAGAGCTACAGCTTCAAAATCTGAAAACCAGAAAAGTTTTCTAAAATCTGTACTCAGAGATCAAATAAATGCTGAAAAGAGGCTTTCAGCCAAGGAATCGGGTCTACTTAAACCTACAAGTGCCAGGTCAGGCGTGGCTGAAAACAGCAGTAAATTAAAACCCATTCAGAGCGGTGTTACCAGAGGAAGCAGTGGAAGGATCTCAGCCCTGCAAGGCAAAGATTCTAAACTGGATTACAGGGATGTTACAAAACAGCCTCAGGAAACAGAGGCTAAACCTTCCATCATGAAACGGGATGACAGCAACAATAAG
Seq A exon
ACTTTGACAGGGCAAAACACTAAGAATCCTAAAAATACCACTGGTAGAAGTTCAAAATCCAAAGAG
Seq C2 exon
GAACCTTTATTTCCATTTAATTTGGATGAATTTGTTACTGTGGATGAGGTTATAGAAGAAGTAAATCCTTTTCACGTCAAGCAGAATCCACTGAAGGGAAAAAGGAAAGAAGCTCTCAAAAATACCCCTTCCTCTGAACTGAACTTAAAGAAGAAGAAGGGAAAGATCTCTGCTCCTCGTGTGGTTGAGGGAGAGTTATCTTTTGTAACATTGGATGAGATTGGGGAAGAGGAAGATGCAGCTGCACAGCTAGCACAAGCTCTAGTCACTGTGGATGAAGTAATTGATGAAGATGACATAAACGTGGAAGACATGGTTAAAAATTCAAACTCACTTCTTACATTAGATGAGTTAATTGATCAAGATGATTGCATTTCTCACAGTGAAACTAAAGATGTTACTGTGCTGTCTGTGGCTGAAGAGCAAGATCTTCTCAAACAGGAACGCTTGGTAACTGTGGATGAAATTGGGGAAGTAGAAGAGCTACCTTTAAATGAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009242-'26-30,'26-29,27-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.796 A=1.000 C2=0.627
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACGGGATGACAGCAACA
R:
AGTTCAGTTCAGAGGAAGGGGT
Band lengths:
171-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]