HsaEX0074102 @ hg19
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:17894]
Coordinates
chr2:71645732-71658558:+
Coord C1 exon
chr2:71645732-71645769
Coord A exon
chr2:71651780-71651845
Coord C2 exon
chr2:71658457-71658558
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTCTTATTTACTATTTCAGACT
3' ss Score
8.93
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTGCAAATTGAGCATGACCCAGAATTAGAAAAAGAAAG
Seq A exon
ACTTTGGCTGAGCAAAACACTAAGAATCCTAAAAGCACTACTGGTAGAAGTTCCAAATCTAAAGAG
Seq C2 exon
TTGATGAGGAATCTGGATTAAAGGATTCAGAACCAGAGCGAAAACGCAAGAAGACTGAAGACTCTTCTTCAGGCAAATCAGTGGCGTCTGATGTCCCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292_MULTIEX2-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.795 A=0.827 C2=0.971
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAATTGAGCATGACCCAGA
R:
CTCAGGGACATCAGACGCCA
Band lengths:
138-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)