MmuEX0053000 @ mm9
Exon Skipping
Gene
ENSMUSG00000030016 | Zfml
Description
zinc finger, matrin-like [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83926196-83929903:+
Coord C1 exon
chr6:83926196-83927423
Coord A exon
chr6:83928016-83928081
Coord C2 exon
chr6:83928988-83929903
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGTATTTCTTAATATTTTAGGCA
3' ss Score
8.78
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
AAAAATTGGAGAAGATTATAGCAGCAATAAGAGAAAAGCCAATTGAAAGTTCTGTAATCAAGGCAGACCCAACTAAAGGAGTGGATCAGACCAGTAAGCCTGATGAAACTGGTAAAAGTAGTGTGCTGACTGTATCAAATGTATATAGTAGTAAATCAAGCATCAAGGCTACTGTGGTCTCTTCTCCTAAAGCAAAAAGTACACCTTCAAAAACTGAAAGTCACAGCACCTTCCCAAAACCTGTGCTTAGAGAGCAAATAAAGGCTGAAAAGAAAGTTTCAGCCAAGGAATTTGGTCTGCTTAAAAATACCAGATCAGGCTTGGCAGAAAGCAACAGTAAATCCAAACCCACTCAGATTGGTGTTAACAGAGGGTGCAGTGGAAGGATCTCAGCCCTTCAGTGCAAGGATTCTAAAGTGGATTACAAGGACATAACAAAACAGTCTCAGGAAACAGAGACTAAACCTCCCATCATGAAACGGGATGACAGCAACAATAAG
Seq A exon
GCATTGGCTTTGCAGAACACTAAGAATTCTAAAAGTACTACAGATAGAAGTTCCAAATCGAAAGAG
Seq C2 exon
GAACCATTATTTACATTTAATTTGGATGAATTTGTTACTGTGGATGAAGTCATAGAAGAAGTAAATCCTTCTCAAGCCAAGCAGAATCCATTAAAAGGAAAAAGAAAGGAAGCCCTCAAAATTTCTCCTTCCCCTGAACTTAACTTAAAAAAGAAAAAGGGGAAAACTTCTGTCCCTCACAGTGTTGAGGGAGAATTGTCCTTTGTAACATTAGATGAAATAGGGGAGGAAGAAGATGCAACTGTGCAAGCTCTAGTCACTGTGGATGAAGTCATTGATGAAGAAGAGCTCAATATGGAAGAAATGGTAAAAAATTCCAACTCCCTTCTTACCTTAGATGAACTAATTGACCAAGATGATTGCATTCCCCACAGTGGACCTAAAGATGTTACTGTCCTGTCGATGGCTGAAGAACAAGATCTACAACAGGAACGCTTGGTAACTGTGGATGAAATTGGAGAAGTAGAAGAGTCAGCAGACATAACTTTTGCTACTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-'27-31,'27-30,28-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.605 A=1.000 C2=0.755
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCCATCATGAAACGGGA
R:
GGGAAGGAGAAATTTTGAGGGCT
Band lengths:
170-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: