HsaEX0074102 @ hg38
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr2:71418602-71431428:+
Coord C1 exon
chr2:71418602-71418639
Coord A exon
chr2:71424650-71424715
Coord C2 exon
chr2:71431327-71431428
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTCTTATTTACTATTTCAGACT
3' ss Score
8.93
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTGCAAATTGAGCATGACCCAGAATTAGAAAAAGAAAG
Seq A exon
ACTTTGGCTGAGCAAAACACTAAGAATCCTAAAAGCACTACTGGTAGAAGTTCCAAATCTAAAGAG
Seq C2 exon
TTGATGAGGAATCTGGATTAAAGGATTCAGAACCAGAGCGAAAACGCAAGAAGACTGAAGACTCTTCTTCAGGCAAATCAGTGGCGTCTGATGTCCCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292_MULTIEX2-2/7=C1-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAATTGAGCATGACCCAGA
R:
CTCAGGGACATCAGACGCCA
Band lengths:
138-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development