RnoEX0101592 @ rn6
Exon Skipping
Gene
ENSRNOG00000014501 | Zfp638
Description
zinc finger protein 638 [Source:RGD Symbol;Acc:1309746]
Coordinates
chr4:115674838-115678488:+
Coord C1 exon
chr4:115674838-115676053
Coord A exon
chr4:115676639-115676704
Coord C2 exon
chr4:115677573-115678488
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGTATTTCTTAATATTTTAGGCA
3' ss Score
8.78
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
AAAAACTGGAGAAGATTATTGCAGCCATAAGAGAAAAGCCAATTGAAAGTGCTGTAATCAAGGCAGACCCAGCTAAAGGAGTGGAGCAGAGCAGTAAGCCTGATGAAACTGGTAAAACTAGTGTGCTGACTGTATCAAGTGTGTACAGTAGTAAGTCAAGCATCAAGGCTACTGTGGTCTCTTCTCCTAAAGCAAAAAGTACACCTTCAAAAACTGAAAGTCAGAACATCTTTCCAAAACCTGTGCTTAGAGAGCAAATAAATGCTGAAAAGAAAGTTTCAGCCAAGGAATTTGGTCTGCTTAAAAATACCAGATCAGGCTTGGCAGAAAGCAACAGTAAATCCAAACCCACTCAGATTGGTGTTAACAGAGGGTGCAGTGGAAGGATCTCAGCCCTTCAGTGCAAGGATTCTAAAGTGGATTACAAGGACATAACAAAACAGTCTCAGGAAACAGAGACTAAACCTCCCATCATGAAACGGGATGACAGCAACAATAAG
Seq A exon
GCATTGGCTTTGCAGAACACTAAGAATTCTAAAAGTACTACTGATAGAAGTTCCAAATCGAAAGAG
Seq C2 exon
GAACCATTATTTACATTTAATTTGGATGAATTTGTTACTGTGGATGAAGTCATAGAAGAAGTAAATCCTTCTCAAGCCAAGCAGAATCCATTAAAAGGAAAAAGAAAGGAAGCCCTCAAAATTTCTCCATCCCCTGAACTTAACTTAAAAAAGAAAAAGGGGAAAACTTCTGTTCCTCACAGTGTTGAGGGAGAATTGTCCTTTGTAACATTAGATGAAATAGGGGAGGAAGAAGATTCAACTGCGCAAGCTCTAGTCACTGTGGATGAAGTCATTGATGAAGAAGAGCTCAATATGGAAGAAATGGTAAAAAATTCTAACTCCCTTCTTACCTTAGATGAACTAATTGACCAAGATGATTGCATTCCCCACAGTGGACCTAAAGATGTTACTGTCCTGTCCATGGCTGAAGAGCGAGATCTTCAACAGGAACGCTTGGTAACTGTTGATGAAATTGGAGAAGTAGAAGAGTCAGCAGACATAACCTTTGCTACTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014501-'33-35,'33-34,34-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=1.000 C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCCATCATGAAACGGGA
R:
GGGATGGAGAAATTTTGAGGGCT
Band lengths:
170-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]