BtaEX6043405 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033010 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25986]
Coordinates
chr11:15241261-15252476:+
Coord C1 exon
chr11:15241261-15241394
Coord A exon
chr11:15248215-15248327
Coord C2 exon
chr11:15252410-15252476
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTGGTATTCCACCAGAAT
3' ss Score
6.81
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGCTTTAGGAAAAAGGACACGGTTCCAGGAAAATTATGTTGCACAACTTATTCTAGATGTAAGAAGGGAAGGAACTGTCTTTTCAAATTGTGAATTCACTCCAGCACCCACTCCTCAGGAATATTTAACCAAG
Seq A exon
AATCTTGAGCTCAATGATGATACCGTTCTAAATGAGATAAAGTTAGCAGATTGTGAACAGTTTCAGATGCCTGATCTATGTGCTGAAGAGCTTGCTGTTATCCTTGGAATCTG
Seq C2 exon
CACAGATTTCCAAAAGAATAACCCAGTGCATAAGTTAACTGAAGAGGAACTGCTGGCATTTACATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033010-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAAAGGACACGGTTCCA
R:
TGATGTAAATGCCAGCAGTTCCT
Band lengths:
194-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]