DreEX6054081 @ danRer10
Exon Skipping
Gene
ENSDARG00000007918 | ttc27
Description
tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
Coordinates
chr17:22780908-22790226:+
Coord C1 exon
chr17:22780908-22781047
Coord A exon
chr17:22785075-22785187
Coord C2 exon
chr17:22790160-22790226
Length
113 bp
Sequences
Splice sites
3' ss Seq
ATGCATCTTTGTGTTTATAGGAC
3' ss Score
8.57
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGCTCTAGGGAAGCGAACTCGTTTTCAGGAGAACTTTTTGGCTCAGCTCATCTTAGATGTAAAGCGAAAGGACAACTCGCCCTTTTACAACTCCGAGAGTCCCTCCAGTACACCAACACCTAAAGAGCTCCTACCAAAG
Seq A exon
GACCATCAGCTGAGCGACGATACAGTCCTAAACCAGATTAATCTTGCAGAACCATCTGAGCATGAACTTCCAGACCTAAGCGCTGAGGAGCAAGCCTTCATACTGGCCACATG
Seq C2 exon
CACAGACTTCCAGAAGAATAATCCAGTTCACAAGCTGAATGATGAGGAGCTCCTGGCCTTCACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007918-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.263 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCTAGGGAAGCGAACTC
R:
TGAAGGCCAGGAGCTCCTC
Band lengths:
202-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]