MmuEX0049496 @ mm10
Exon Skipping
Gene
ENSMUSG00000024078 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:MGI Symbol;Acc:MGI:1921446]
Coordinates
chr17:74742918-74770356:+
Coord C1 exon
chr17:74742918-74743051
Coord A exon
chr17:74747652-74747764
Coord C2 exon
chr17:74770243-74770356
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTGTGTCCCACTAGAAT
3' ss Score
10.41
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
GTGCCTTGGGAAAAAGGACACGATTCCAGGAAAATTACGTGGCGCAGCTGATTGTAGATGTCAGGAGAAAAGAGGCTGTCCCTTTCAGTTGTGAGTTCAGCCCAGCACCCACGCCCCAGGAGTGTTTGGCCAAG
Seq A exon
AATCTTGAGCTCAATGATGATACTGTTCTGAATGAAATAAAGTTAGCAGATAGTGAACGGTTTCAGATGCCAGACCTGTGTGCGGAGGAGCTTGCCGTGGTCCTTGGAGTCTG
Seq C2 exon
TGTTTACTTTCACAACCAAAGTTCTGGGCCATTCAGATGTCAGCCTTGATCCTCCGGACAAAACTTGAGAGAGGAAGCACACGGCGAGTGGAGCGGGCCATGAGGCAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024078_MULTIEX1-1/5=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGGAAAAAGGACACGATTCC
R:
CTCATGGCCCGCTCCACTC
Band lengths:
234-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types