HsaEX6012856 @ hg19
Exon Skipping
Gene
ENSG00000018699 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:25986]
Coordinates
chr2:32891702-32903989:+
Coord C1 exon
chr2:32891702-32891835
Coord A exon
chr2:32897339-32897451
Coord C2 exon
chr2:32903923-32903989
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTGTATTCTACTAGAAT
3' ss Score
7.69
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTGCTTTGGGAAAAAGAACACGGTTCCAGGAAAATTATGTGGCACAACTGATTCTAGATGTAAGAAGGGAAGGGGATGTCCTTTCAAATTGTGAATTCACTCCAGCACCCACTCCTCAGGAACATTTAACCAAG
Seq A exon
AATCTTGAGCTCAATGATGACACCATTCTGAATGACATAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTGTGTGCTGAAGAGATCGCTATTATTCTTGGAATCTG
Seq C2 exon
CACTAATTTTCAAAAGAATAACCCAGTGCACACATTAACTGAAGTGGAGCTTCTGGCATTTACATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018699-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAAAAGAACACGGTTCCA
R:
TGATGTAAATGCCAGAAGCTCCA
Band lengths:
195-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)