RnoEX0094700 @ rn6
Exon Skipping
Gene
ENSRNOG00000042932 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:RGD Symbol;Acc:1305264]
Coordinates
chr6:21843552-21851666:-
Coord C1 exon
chr6:21851533-21851666
Coord A exon
chr6:21847431-21847543
Coord C2 exon
chr6:21843552-21843618
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTGTCTCACCAGAAT
3' ss Score
10.34
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
GTGCTTTGGGGAAAAGGACACGATTCCAGGAGAATTATGTGGCACAGCTGATTGTAGATGTCCGGAGAGAAGAGGATGTCCCTTGCAGTCGTGAGTTCAGCCCAGCACCCACCCCCCAGGAGTATTTAACCAAG
Seq A exon
AATCTTGAGCTCAACGATGATACCGTTCTGAATGAAATAAAGTTAGCAGATAGTGAGCGGTTTCAGATGCCAGACCTGTGTGCTGAGGAGCTTGCTGTGGTCCTTGGAGTCTG
Seq C2 exon
CACAAATTTCCAGAAGAACAACCCAGTTCATAAGCTAACGGAGGAGGAGCTGCTGGCCTTCACATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042932-'9-18,'9-15,11-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGGGAAAAGGACACGA
R:
GATGTGAAGGCCAGCAGCTC
Band lengths:
198-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]