BtaEX6043409 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15941933-15947670:+
Coord C1 exon
chr11:15941933-15942055
Coord A exon
chr11:15946182-15946331
Coord C2 exon
chr11:15947489-15947670
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTTGTTCCCTTCCAGGTT
3' ss Score
11.94
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
ACGACTATGCCCAGCTGTGTAACATCCCCGTCACGGGACGCCGGCGGCCATATGGACGGGATGCCTTGGTTGACTTCAGTGAACAGTATGCTCCCGAAGCTGATCCCTACTTTGTTCGAGACC
Seq A exon
GTTTTCTGAACAGCTTTGAGGAGTTGCAGGCGGAAGAATGTGGCATCCTCAATGGGTGTGAAAACGGTCGCTGTGTCAGGGTGCAGGAAGGCTACACCTGCGATTGCTTTGATGGGTATCACCTGGATATGGCCAAGATGACCTGTGTCG
Seq C2 exon
ATGTCAACGAATGTGATGAGCTGAACAACCGGATGTCTCTCTGCAAGAATGCCAAGTGCATCAACACCGAAGGGTCCTATAAGTGTGTGTGCCTGCCGGGCTTTGTACCTTCTGACAAGCCAAACTACTGCACTCCATTGAATACTGCCTTGAATTTAGAAAAAGACAGTGACCTGGAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-'66-67,'66-66,68-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=11.9)
A:
PF0000822=EGF=WD(100=58.8),PF062476=Plasmod_Pvs28=PU(40.0=66.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF062476=Plasmod_Pvs28=PD(58.8=82.0),PF0764510=EGF_CA=WD(100=72.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTAACATCCCCGTCACG
R:
TGGAGTGCAGTAGTTTGGCTTG
Band lengths:
246-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]