MmuEX6079383 @ mm10
Exon Skipping
Gene
ENSMUSG00000001870 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:MGI Symbol;Acc:MGI:109151]
Coordinates
chr17:75385073-75391767:+
Coord C1 exon
chr17:75385073-75385195
Coord A exon
chr17:75389430-75389579
Coord C2 exon
chr17:75390372-75391767
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTCTGCCTTTGCCTTTGCAGGCT
3' ss Score
11.56
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
ATGACTATGCCCAGCTGTGCAATATCCCTGTGACTGGGCGTCGGCGGCCATATGGACGGGATGCATTGGTGGACTTCAGTGAACAGTATGGCCCAGAAACAGACCCTTACTTCATCCAGGATC
Seq A exon
GCTTTCTAAATAGCTTTGAGGAGCTACAGGCTGAGGAGTGTGGCATCCTCAATGGTTGTGAAAACGGCCGCTGTGTGAGAGTCCAGGAAGGATACACTTGCGATTGCTTTGATGGATATCACCTGGATATGGCCAAGATGACCTGTGTCG
Seq C2 exon
ATGTAAATGAATGCAGCGAGCTGAATAATCGGATGTCTCTCTGCAAGAACGCCAAGTGCATTAACACAGAAGGCTCCTACAAATGCTTGTGTCTGCCAGGCTACATACCATCCGACAAGCCCAACTACTGTACACCCCTGAACAGCGCTTTGAATTTAGACAAAGAAAGTGACCTGGAGTGAAGGAGAAGAAGCTGCGTAACCTATGCCCATATACTCTGCACTGTGTAAAGGGAAAGGGAGAGATGTATACTTGAGACACTGCACCTAACCCAGAATGTGGCAAAGACAGAGACAACTTGGAGTTGAGTGAACCCCCAAAGACAGTGAGCGGATGGAGCTGGAACCTGACAGGTGCAACAGACCAAATGGACATTTCTTCAAAAACCCAGTATATATAGTCTGTTCATATGTAAAATTCAGTGGAAAAGAGGCAGGACATGGCTGTCATTTTAAACAGAGGTTGTATTATTATCTTGTTTTGATTTTTTTTTTTACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001870-'63-66,'63-65,65-66
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=11.9)
A:
PF0000822=EGF=WD(100=58.8),PF062476=Plasmod_Pvs28=PU(40.0=66.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF062476=Plasmod_Pvs28=PD(58.8=82.0),PF0764510=EGF_CA=WD(100=72.1)
Main Skipping Isoform:
ENSMUST00000001927fB12380
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTATGCCCAGCTGTGCAAT
R:
GTAGTTGGGCTTGTCGGATGG
Band lengths:
249-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types