GgaEX1034353 @ galGal4
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
latent transforming growth factor beta binding protein 1 [Source:HGNC Symbol;Acc:HGNC:6714]
Coordinates
chr3:30485202-30489793:-
Coord C1 exon
chr3:30489671-30489793
Coord A exon
chr3:30487513-30487662
Coord C2 exon
chr3:30485202-30486245
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTAATTCTTTCTTCACTCAGGTT
3' ss Score
7.63
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
AGGATTATGCCCAGCTGTGCAACATTCCTGTTCCAGGATCTCGACGGCCATATGGACAAGATGCTTTGGTTGACTTTGAGGAGCACTACACTCCAGAAACTAATCCATACTTTGTCGAAGACC
Seq A exon
GTTTTCTGAACAGCTTTGAGGAGTTACAGGCAGAGGAATGTGGTATTCTAAATGGATGTGAAAATGGCCGATGTGTGAGAGTGCAGGAGGGCTACACCTGTGACTGCTTTGATGGTTATCACCTGGACATGGCCAAGATGACTTGTGTTG
Seq C2 exon
ATGTGAATGAGTGCAATGAGCTGAACAACAGGATGTCTCTCTGCAAGAACGCCAAATGCATTAACACAGAAGGTTCGTACAAGTGTTTGTGTCTCCCAGGGTACGTACCTTCAGACAAGCCAAACTACTGCACACCACTGAACTCAGAACTAGACAGTGAACTGGAGTAGAGGAAAATCTCCATATCCTAAGCCCATATACTCTGCACTGTATAAAGAAAAAGAAGAAGAAGTATTTAACTTGAGAAGAGGAGGCACCAGAGTAGTGAACGTAAGAGGAAAAAAGCATTAAATATGTGTCAAAGGTGAGATGTGATGGGCTGACTGCCAATCAGCTTCACTGAAGTGACAGACCAAACCGAATGGACACATTACTCTGTATGAAAGAAATAATCAAGTATATAGTGTGTTCATAAGAAAAAAAAATCATTGAAAATAAGCAAAAACAGTGCTGTTATTTTAAACAGAAGAGCTTTAGTTTTCTGTTTCTTTGTTGTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-'64-76,'64-75,67-76
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.9=11.9)
A:
PF0000822=EGF=WD(100=58.8),PF062476=Plasmod_Pvs28=PU(40.0=66.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF062476=Plasmod_Pvs28=PD(58.8=87.7),PF0764510=EGF_CA=WD(100=77.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCCCAGCTGTGCAACATT
R:
GTGGTGTGCAGTAGTTTGGCT
Band lengths:
256-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]