RnoEX0051352 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21203502-21210571:-
Coord C1 exon
chr6:21210449-21210571
Coord A exon
chr6:21205277-21205426
Coord C2 exon
chr6:21203502-21204455
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTCTGCCTTTGCCTTGTAGGCT
3' ss Score
10.23
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ATGACTATGCCCAGCTGTGCAACATCCCTGTGACAGGACGGCGGCGACCATATGGACGGGATGCGTTGGTGGACTTCAGTGAACAGTATGGCCCAGAAACAGACCCTTACTTCATTCAGGATC
Seq A exon
GCTTTCTAAACAGCTTTGAGGAGCTACAGGCTGAGGAATGTGGCATCCTCAACGGCTGTGAAAATGGCCGCTGTGTAAGGGTTCAGGAAGGTTATACTTGCGATTGCTTTGATGGATATCATCTGGATATGGCCAAGATGACCTGTGTTG
Seq C2 exon
ATGTAAATGAATGCAGCGAGCTGAATAATCGGATGTCTCTCTGCAAGAACGCCAAGTGCATTAACACAGAAGGCTCCTACAAATGCGTGTGTCTACCAGGCTACGTACCATCTGACAAGCCCAACTACTGTACACCACTGAACACCGCTTTGAATTTAGACAAAGACAGTGACCTGGAGTGAAGGAGAAGCTACGTAACCTATGCCCATATACTCTGCACTGTGTAAAGGAAAAGGGAGAGAGGTATACTTGAGACACTGCACCTAATCCAGACCATGGCAAAGAAGGAAACAACGTGGAGTTGCGTGAACCCCCAAAGAAAGTGAGCGGATGGAGTAGCAGCCTGAGAGGTGCGACAGACCAAATGGACATTTCCTCAAAAACCCAGTATATATAGTCTGTTCATATGTAAAATTCAATGGAAAAGAGGCAGGATGCGGCTGTCATTTTAAACAGAGGTTGTATTATTATCTTGTTTTGATTTTTTTTTTTACTATTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090-'46-50,'46-49,47-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=11.9)
A:
PF0000822=EGF=WD(100=58.8),PF062476=Plasmod_Pvs28=PU(40.0=66.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF062476=Plasmod_Pvs28=PD(58.8=82.0),PF0764510=EGF_CA=WD(100=72.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCAACATCCCTGTGACAG
R:
AAGCGGTGTTCAGTGGTGTAC
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]