BtaEX6043412 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15906282-15908366:+
Coord C1 exon
chr11:15906282-15906410
Coord A exon
chr11:15907089-15907229
Coord C2 exon
chr11:15908196-15908366
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTCCTCTGAAGATA
3' ss Score
9.34
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATGCAGATGAATGCCTACTTTTTGGACAAGAGATCTGCAAAAATGGCTTCTGTATGAACACTCAGCCTGGTTATGAATGCTACTGTAAGCAAGGGACATACTACGATCCTGTCAAATTGCAGTGCTTTG
Seq A exon
ATATAGACGAGTGTCAAGACCCCAACAGTTGCATTGATGGCCAGTGCATTAATACAGAAGGCTCTTATAACTGCTTCTGTACACACCCAATGGTCCTGGATGCTTCAGAAAAAAGATGTATCCGACCAACTGAATCACATG
Seq C2 exon
AACAAATTGAAGAAACCGATGTCTACCAAGATCTGTGCTGGGAACATCTGAGTGACGAGTATGTGTGTAGCCGCCCTCTTGTCGGCAAGCAAACAACATACACGGAGTGCTGCTGTTTGTACGGAGAGGCCTGGGGCATGCAGTGCGCCCTCTGTCCCATGAAGGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-'63-60,'63-58,64-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=83.3)
C2:
PF0068312=TB=PU(86.0=63.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGATGAATGCCTACTTTTTGG
R:
AGCAGCACTCCGTGTATGTTG
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]