MmuEX6079386 @ mm10
Exon Skipping
Gene
ENSMUSG00000001870 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:MGI Symbol;Acc:MGI:109151]
Coordinates
chr17:75362510-75364509:+
Coord C1 exon
chr17:75362510-75362638
Coord A exon
chr17:75363338-75363478
Coord C2 exon
chr17:75364339-75364509
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGATTTTCTTTTCTCTTCAGATA
3' ss Score
11.36
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
ATGCTGATGAATGCTTGCTGTTTGGAGAGGAAATCTGTAAAAATGGTTACTGTTTGAACACTCAACCTGGGTATGAATGCTACTGTAAGCAAGGGACATACTATGATCCTGTCAAATTACAGTGCTTTG
Seq A exon
ATATGGATGAATGCCAAGACCCTAACAGTTGCATTGACGGCCAGTGTGTGAACACAGAGGGCTCCTACAACTGCTTTTGCACCCACCCAATGGTCCTGGATGCCTCTGAGAAGAGATGTGTGCAACCAACTGAATCAAATG
Seq C2 exon
AACAAATAGAAGAGACCGATGTCTATCAAGATCTGTGCTGGGAGCATCTGAGTGAGGAGTACGTGTGTAGCCGTCCTCTCGTAGGCAAGCAGACGACGTACACAGAATGCTGCTGTTTGTACGGGGAGGCTTGGGGCATGCAGTGTGCTCTGTGCCCCATGAAGGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001870-'57-63,'57-54,60-63=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=83.3)
C2:
PF0068312=TB=PU(86.0=63.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGCTGTTTGGAGAGGAA
R:
CAAGCCTCCCCGTACAAACAG
Band lengths:
251-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types