GgaEX0015625 @ galGal3
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
NA
Coordinates
chr3:32387625-32392032:-
Coord C1 exon
chr3:32391904-32392032
Coord A exon
chr3:32390394-32390534
Coord C2 exon
chr3:32387625-32387795
Length
141 bp
Sequences
Splice sites
3' ss Seq
CATTTCCTTCCATTTTAAAGACA
3' ss Score
5.2
5' ss Seq
GTGGTATGA
5' ss Score
5.27
Exon sequences
Seq C1 exon
ATGCTGATGAATGCCAGCTCTTTGGACAAGAAATCTGTAAAAATGGCTTCTGTTTGAATACACAGCCAGGTTATGAGTGCTACTGCAAACAAGGCACATACTATGACCCTGTTAAGCTCCAGTGCTTTG
Seq A exon
ACACGGATGAATGTCAGGACCCAAACAGCTGTATTGATGGCCAGTGCATTAACACAGAAGGATCTTACAACTGTTTCTGTACACACCCAATGGTTTTGGACGCAACAGAAAAGCGATGCATCAGACCAGCAGATTCAAGTG
Seq C2 exon
AACAAACTGAAGAAACTGAGGTCTACCAGGATCTTTGCTGGCAGCATCTAAGTGACGATTTTGTTTGTAGTCGACCTCTGGTTGGAAAGCAGACTACATACACTGAGTGCTGTTGCTTGTATGGTGAAGCCTGGGGCATGCAGTGTGCCTTGTGTCCGATGAAGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=83.3)
C2:
PF0068312=TB=PU(85.7=62.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGCCAGCTCTTTGGACA
R:
CCCAGGCTTCACCATACAAGC
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event