RnoEX0051351 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21231540-21233545:-
Coord C1 exon
chr6:21233417-21233545
Coord A exon
chr6:21232580-21232720
Coord C2 exon
chr6:21231540-21231710
Length
141 bp
Sequences
Splice sites
3' ss Seq
TAATTTTCTCTTCTCTTAAGATA
3' ss Score
6.86
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATGCTGACGAATGCCTGCTGTTTGGAGAGGAAATCTGCAAAAACGGTTACTGTTTGAACACTCAGCCTGGGTATGAATGCTACTGCAAGGAAGGGACATACTACGATCCTGTCAAATTACAGTGTTTTG
Seq A exon
ATATGGATGAATGCCAAGACCCTAACAGTTGTATCGATGGCCAGTGTGTTAATACAGAGGGCTCTTACAACTGCTTTTGCACCCACCCAATGGTCCTGGATGCCTCTGAGAAGAGATGTGTGCAGCCAACTGAATCAAATG
Seq C2 exon
AACAAATAGAAGAAACCGATGTCTATCAAGATCTGTGCTGGGAGCATCTGAGTGAGGAGTACGTGTGTAGCCGTCCTCTTGTAGGCAAGCAGACGACATACACAGAGTGCTGCTGTTTGTACGGGGAGGCATGGGGCATGCAGTGTGCTCTCTGCCCCATGAAGGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090-'43-44,'43-42,44-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=83.3)
C2:
PF0068312=TB=PU(86.0=63.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCTGCTGTTTGGAGAGG
R:
CCGTACAAACAGCAGCACTCT
Band lengths:
244-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]