BtaEX6043414 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15904549-15906410:+
Coord C1 exon
chr11:15904549-15904725
Coord A exon
chr11:15905577-15905663
Coord C2 exon
chr11:15906282-15906410
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTTGTCTCTTCTGAAATCAGCTG
3' ss Score
5.1
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACTCAGAAGTAGATGAACCCAGAGAAGAAAAGAAAGAATGCTACTATAACCTGAACGACGCCAGTCTGTGTGACAACGTGCTGGCTCCCAATGTCACCAAGCAGGAGTGCTGCTGCACCTCCGGTGCTGGGTGGGGAGACAACTGTGAGATTTTCCCCTGTCCGGTCCCGGGGACTG
Seq A exon
CTGAATTCACTGAAATGTGTCCTAGAGGGAAAGGTTTTGTTCCCTCGGAAGAATCCTCTTATGGCGTTGATGGTGAAAACTATAAAG
Seq C2 exon
ATGCAGATGAATGCCTACTTTTTGGACAAGAGATCTGCAAAAATGGCTTCTGTATGAACACTCAGCCTGGTTATGAATGCTACTGTAAGCAAGGGACATACTACGATCCTGTCAAATTGCAGTGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-'61-55,'61-54,62-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(86.4=63.3)
A:
PF0068312=TB=PD(11.4=16.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGGAGACAACTGTGAGA
R:
GCACTGCAATTTGACAGGATCG
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]