RnoEX0051350 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21233417-21236977:-
Coord C1 exon
chr6:21236798-21236977
Coord A exon
chr6:21235288-21235374
Coord C2 exon
chr6:21233417-21233545
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTCTCTTAAAATCAGCTG
3' ss Score
6.08
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
ATTCAGGTGTGGATCGTCAGCCCAAAGAAGAAAAGAAGGAGTGTTATTATAATCTCAATGATGCCAGTCTCTGTGATAACGTGCTGGCCCCCAACGTCACCAAACAAGAGTGCTGCTGTACATCGGGCGCCGGCTGGGGAGACAATTGTGAGATCTTCCCTTGCCCAGTCCAGGGGACTG
Seq A exon
CTGAGTTCTCGGAAATGTGCCCTAGAGGAAAAGGTTTTGTCCCTGCTGGAGAATCCTCTTACGAAACCGGTGGTGAGAACTACAAAG
Seq C2 exon
ATGCTGACGAATGCCTGCTGTTTGGAGAGGAAATCTGCAAAAACGGTTACTGTTTGAACACTCAGCCTGGGTATGAATGCTACTGCAAGGAAGGGACATACTACGATCCTGTCAAATTACAGTGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090-'40-41,'40-40,42-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(86.4=62.3)
A:
PF0068312=TB=PD(11.4=16.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGATAACGTGCTGGCC
R:
CCCAGGCTGAGTGTTCAAACA
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]